PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0036s0077.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 255aa    MW: 28680.6 Da    PI: 5.8175
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0036s0077.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.41.1e-54701731101
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql+sfw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fi+eltlrsw+h+eenkrrtl+k+diaaa+ rtd
  Kaladp0036s0077.1.p  70 QLQSFWANQhqeIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFIFELTLRSWNHTEENKRRTLQKNDIAAAIGRTD 159
                          89*****999999***************************************************************************** PP

                NF-YC  88 ifdflvdivprdel 101
                          ifdflvdivpr++l
  Kaladp0036s0077.1.p 160 IFDFLVDIVPREDL 173
                          ***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.150.609.3E-45494IPR001606ARID DNA-binding domain
SuperFamilySSF471131.31E-3263164IPR009072Histone-fold
PfamPF008082.8E-2192155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.6E-3795155IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDHQGQGQQP AMGTVDNSAQ MSYAMPPYQP NQMTGAAPGA ASAQAGGQLP QHQLAYQHIN  60
PLQQQQLQQQ LQSFWANQHQ EIERVTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA  120
RACEMFIFEL TLRSWNHTEE NKRRTLQKND IAAAIGRTDI FDFLVDIVPR EDLKDEMLGS  180
IPRGSIPVGA PADMLPYPYM PMQHMPQVGT PGMIMGKPMM DPSMYAQQPH PYMAPQMWPQ  240
PQQQQQQEQS SSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C8e-4085170994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B8e-4085170994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g91_C9e-40551703119HapE
4g92_C9e-40551703119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494629.11e-134PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B22e-86NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLG7KYQ41e-131G7KYQ4_MEDTR; Nuclear transcription factor Y protein
TrEMBLI3TAX91e-131I3TAX9_MEDTR; Nuclear transcription factor Y subunit C2
STRINGGLYMA19G42460.11e-127(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-79nuclear factor Y, subunit C9